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GIGSEAdata: Gene set collection used for the Genotype Imputed Gene Set Enrichment Analysis (GIGSEA)8 years ago
Abstract | 1. Description of gene sets | 2 Load data of gene sets:
GIGSEAdata 1.31.0| Shijia Zhu | Department of Genetics and Genomic Sciences and Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USAGIGSEAdata_tutorial.Rmd
GIGSEA: Genotype Imputed Gene Set Enrichment Analysis8 years ago
Abstract | 1. Import packages | 2. Quick start | 3. One example of MetaXcan output | 4. Load data of gene sets | 4.1 Discrete-valued gene sets: | 4.2 Continuous-valued gene sets: | 4.3 User self-defined gene set | 5. Gene set enrichment analysis | 5.1 Gene set enrichment analysis using weighted simple linear regression | 5.2 Gene set enrichment analysis using weighted multiple regression model | 5.3 One-step weightedGSEA
GIGSEA 1.31.0| Shijia Zhu | Department of Genetics and Genomic Sciences and Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USAGIGSEA_tutorial.Rmd